antsMotionCorrStats(1) part of ANTS registration suite

DESCRIPTION

COMMAND:

antsMotionCorrStats
antsMotionCorrStats - create summary measures of the parameters that are output by antsMotionCorr. Currently only works for linear transforms. Outputs the mean and max displacements for the voxels within a provided mask, at each time point. By default the displacements are relative to the reference space, but the framewise option may be used to provide displacements between consecutive time points

OPTIONS:

-x, --mask mask.nii.gz
Mask image - compute displacements within mask.
-m, --moco MOCOparams.csv
motion correction parameters from antsMotionCorr.
-o, --output corrected.csv
Specify the output file
-t, --transform
Specify the index for a 3D transform to output
-f, --framewise
do framewise summarywise stats <VALUES>: 0
-s, --spatial-map
output image of displacement magnitude
-d, --timeseries-displacement
output 4d time-series image of displacement magnitude
-h
Print the help menu (short version). <VALUES>: 0
--help
Print the help menu. <VALUES>: 1, 0