DESCRIPTIONBio::DB::GFF::Aggregator::retranscript was written to make the compound feature, ``reftranscript'' for use with Gbrowse editing software developed outside of the GMOD development group. It can be used to aggregate ``reftranscripts'' from ``refexons'', loaded as second copy features. These features, in contrast to ``transcripts'', are usually implemented as features which cannot be edited and serve as starting point references for annotations added using Gbrowse for feature visualization.
Adding features to the compound feature, ``reftranscript'', can be done by adding to the ``part_names'' call (i.e. ``refCDS'').
Title : method Usage : $aggregator->method Function: return the method for the composite object Returns : the string "reftranscript" Args : none Status : Public
Title : part_names Usage : $aggregator->part_names Function: return the methods for the sub-parts Returns : the list "refexon" Args : none Status : Public
Title : main_name Usage : $aggregator->main_name Function: return the method for the main component Returns : the string "reftranscript" Args : none Status : Public
AUTHORPaul Rudnick <[email protected]>.
Copyright (c) 2002 Advanced Biomedical Computing Center, SAIC/NCI-Frederick.
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.