All UNIX flavors
bppalnscore compares two alignment and compute corresponding column scores. Scores can be output to a text file, and/or used to generate a site selection to be output as a Mase file.
You should refer to 'info bppsuite' or to the online manual of bppsuite for a complete list of available options.
generates output for redirection in a file.
reads a file for loading options
Bio++ Development Team.