SYNOPSIS

runCADD [options] [filenames]

DESCRIPTION

This manual page is an almost literal translation of the output provided by runCADD -h command.

OPTIONS

A summary of options is included below. For a complete description, refer to the tutorials and documentation that is available online.

Files <filenames> ending in "net.py" will be laoded as networks in vision. Other files will be executed as Python scripts in which "ed" refers to the VisualProgrammingEnvironment instance.

-h, --help

Show summary of options.

-e, --runAndExit

run the networks and exit

-p, --ipython

create an ipython shell instead of a python shell

-r, --run

run the networks on the command line

-s, --noSplash

doesn't show the CADD splash screen (works only if registered)

-t, --NoTerminal

vision provides its own shell (under menu 'Edit') instead of the terminal

--resourceFolder foldername

stores resource file under .name (defaults to .mgltools)

port values can be passed on the command line (but not to macros):

      Network_net.py nodeName:portName:value

AUTHOR

runCADD was written by researchers of the Molecular Graphics Lab at the Scripps Institute <[email protected]>.

This manual page was written by Thorsten Alteholz <[email protected]>, for the Debian project (but may be used by others).