chaos_plot.pl -i/--input=INPUTFILE -f/--format=SEQFORMAT
-o/--output=OUTPUTFILE -g/--graphics=GRAPHIC FORMAT
DESCRIPTIONThis scripts generates image files using GD image library to visualize nucleotide sequences using chaos plot.
OPTIONSValid graphics formats are currently gd, gd2, png, wbmp, jpeg and gif.
The default size of the image file is 600x400.
The sequence input can be provided using any of the three methods:
- unnamed argument
- named argument
chaos_plot -i filename
- standard input
chaos_plot < filename
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AUTHOR - Jason StajichEmail [email protected]
HISTORYThis code is based on EMBOSS C code for chaos.c by Ian Longden. Included are documentation from EMBOSS code:
Chaos produces a chaos plot. The original application is part of the ACEDB genome database package, written by ** Richard Durbin (MRC LMB, UK) [email protected], and Jean Thierry-Mieg (CRBM du CNRS, France) [email protected]