fastaq_caf_to_fastq(1) Converts a CAF file to FASTQ format


usage: fastaq_caf_to_fastq [options] <infile> <outfile>

Converts CAF file to FASTQ format

positional arguments:

Name of input CAF file.
Name of output FASTQ file

optional arguments:

-h, --help
show this help message and exit
-c, --clip
Use clipping info to clip reads, if present in the input CAF file (as lines of the form "Clipping QUAL start end"). Default is to not clip
-l INT, --min_length INT
Minimum length of sequence to output [1]