fastaq_deinterleave(1) Splits interleaved paired file into two separate files

DESCRIPTION

usage: fastaq_deinterleave [options] <infile> <out_fwd> <out_rev>

Deinterleaves sequence file, so that reads are written alternately between two output files

positional arguments:

infile
Name of fasta/q file to be deinterleaved
out_fwd
Name of output fasta/q file of forwards reads
out_rev
Name of output fasta/q file of reverse reads

optional arguments:

-h, --help
show this help message and exit
--fasta_out
Use this to write output as fasta (default is same as input)