DESCRIPTIONThis program is part of the MIRA assembler package. Fastatool provides a set of tools useful when working with FASTA trace files.
Please check out the documentation below for more detailed information.
SYNOPSISfastatool <toolname> <tool parameters>
- Clips bases on the left and right of a FASTA sequence, writes result to STDOUT.
clipFASTA -l leftclip -r rightclip fastainfile
- Deletes sequences with non-IUPAC bases or empty sequences from a FASTA file, writes the 'surviving' sequences to a new file. If a quality file is given, a cleaned version of that is also written. The sequences in the quality files (if given) MUST be in the same order than in the fasta file.
sanitizeFASTA fastainfile fastaoutfile [fastaqualin fastaqualoutfile]