Filters sequences based on quality
usage: fastq_quality_trimmer [-h] [-v] [-t N] [-l N] [-z] [-i INFILE] [-o OUTFILE]
Part of FASTX Toolkit 0.0.13.1 by A. Gordon ([email protected]
= This helpful help screen.
- [-t N]
= Quality threshold - nucleotides with lower
quality will be trimmed (from the end of the sequence).
- [-l N]
= Minimum length - sequences shorter than this (after trimming)
will be discarded. Default = 0 = no minimum length.
= Compress output with GZIP.
- [-i INFILE]
= FASTQ input file. default is STDIN.
[-o OUTFILE] = FASTQ output file. default is STDOUT.
[-v] = Verbose - report number of sequences.
- If [-o] is specified,
report will be printed to STDOUT.
If [-o] is not specified (and output goes to STDOUT),
report will be printed to STDERR.