Convert FASTQ files to FASTA files
usage: fastq_to_fasta [-h] [-r] [-n] [-v] [-z] [-i INFILE] [-o OUTFILE]
Part of FASTX Toolkit 0.0.14 by A. Gordon ([email protected]
= This helpful help screen.
= Rename sequence identifiers to numbers.
= keep sequences with unknown (N) nucleotides.
Default is to discard such sequences.
= Verbose - report number of sequences.
- If [-o] is specified,
report will be printed to STDOUT.
If [-o] is not specified (and output goes to STDOUT),
report will be printed to STDERR.
= Compress output with GZIP.
- [-i INFILE]
= FASTA/Q input file. default is STDIN.
[-o OUTFILE] = FASTA output file. default is STDOUT.