man fdnapenny (1): Penny algorithm for DNA

SYNOPSIS

fdnapenny -sequence seqsetall [-weights properties] [-howoften integer] [-howmany integer] [-simple boolean] [-outgrno integer] [-thresh toggle] -threshold float -outfile outfile [-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean] [-treeprint boolean] [-stepbox boolean] [-ancseq boolean]
fdnapenny -help

DESCRIPTION

fdnapenny

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Phylogeny:Molecular sequence" command group(s).

OPTIONS

Input section

-sequence seqsetall

: File containing one or more sequence alignments

-weights properties

Additional section

-howoften integer

: Default value: 100

-howmany integer

: Default value: 1000

-simple boolean

: Default value: Y

-outgrno integer

-thresh toggle

: Default value: N

-threshold float

: Default value: 1.0

Output section

-outfile outfile

-trout toggle

: Default value: Y

-outtreefile outfile

-printdata boolean

: Default value: N

-progress boolean

: Default value: Y

-treeprint boolean

: Default value: Y

-stepbox boolean

: Default value: N

-ancseq boolean

: Default value: N

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

AUTHOR

Debian Med Packaging Team <[email protected]>

: Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.