infoseq(1) Display basic information about sequences

SYNOPSIS

infoseq -sequence seqall -columns boolean -delimiter string [-outfile outfile] [-html boolean] -only boolean -heading boolean -usa boolean -database boolean -name boolean -accession boolean -gi boolean -seqversion boolean -type boolean -length boolean -pgc boolean -organism boolean -description boolean
infoseq -help

DESCRIPTION

infoseq

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Data retrieval:Sequence data" command group(s).

OPTIONS

Input section

-sequence seqall

Advanced section

-columns boolean

Set this option on (Y) to print the sequence information into neat, aligned columns in the output file. Alternatively, leave it unset (N), in which case the information records will be delimited by a character, which you may specify by using the -delimiter option. In other words, if -columns is set on, the -delimiter option is overriden. Default value: Y

-delimiter string

This string, which is usually a single character only, is used to delimit individual records in the text output file. It could be a space character, a tab character, a pipe character or any other character or string. Default value: |

Output section

-outfile outfile

If you enter the name of a file here then this program will write the sequence details into that file. Default value: stdout

-html boolean

Default value: N

-only boolean

This is a way of shortening the command line if you only want a few things to be displayed. Instead of specifying: '-nohead -noname -noacc -notype -nopgc -nodesc' to get only the length output, you can specify '-only -length' Default value: N

-heading boolean

Default value: Y

-usa boolean

Default value: @(!$(only))

-database boolean

Default value: @(!$(only))

-name boolean

Default value: @(!$(only))

-accession boolean

Default value: @(!$(only))

-gi boolean

Default value: N

-seqversion boolean

Default value: N

-type boolean

Default value: @(!$(only))

-length boolean

Default value: @(!$(only))

-pgc boolean

Default value: @(!$(only))

-organism boolean

Default value: @(!$(only))

-description boolean

Default value: @(!$(only))

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

AUTHOR

Debian Med Packaging Team <[email protected]alioth.debian.org>

Wrote the script used to autogenerate this manual page.

COPYRIGHT


This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.