maq.pl(1) helper script for maq

SYNOPSIS

maq.pl ,<command> /[,options/] ,<input> /[...]

DESCRIPTION

helper script for maq

Version: 0.4.7

OPTIONS.

easyrun
simple pipeline for small dataset
demo
demonstration of maq functionalities (for SE only)
SNPfilter
filter SNPs
statmap
extract statistics from the error output of 'maq map'
chrpt2snp
convert dbSNP's chr_rpt file to .snp file
ucsc2snp
convert UCSC's SNP dump to .snp file
fastq2bfq
convert fastq in batch
cat2pair
convert paired end reads format
sv
call structural variations
indelpe
post-processing indelpe output

AUTHOR

The program was written by Heng Li <[email protected]>.

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.