SYNOPSISmaq.pl ,<command> /[,options/] ,<input> /[...]
DESCRIPTIONhelper script for maq
- simple pipeline for small dataset
- demonstration of maq functionalities (for SE only)
- filter SNPs
- extract statistics from the error output of 'maq map'
- convert dbSNP's chr_rpt file to .snp file
- convert UCSC's SNP dump to .snp file
- convert fastq in batch
- convert paired end reads format
- call structural variations
- post-processing indelpe output
AUTHORThe program was written by Heng Li <[email protected]>.
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.