mia-3dlandmarks-transform(1) Transform 3D landmark positions.

SYNOPSIS

mia-3dlandmarks-transform -i <in-file> -o <out-file> -t <transformation> [options]

DESCRIPTION

mia-3dlandmarks-transform Transform the locations of the landmarks by means of a given 3D transformation. Note, landmark transformations do the inverse of an image transformation (in a manner of speaking), i.e. given a transformation V(x) in an image transformation the pixel intensity at x is set to the original intensity at V(x), while a landmark at x is moved to V(x).

OPTIONS

-i --in-file=(input, required); io
input landmark set For supported file types see PLUGINS:3dlandmarklist/io
-o --out-file=(output, required); io
output landmark set For supported file types see PLUGINS:3dlandmarklist/io
-t --transformation=(input, required); io
transformation file For supported file types see PLUGINS:3dtransform/io

Help & Info

-V --verbose=warning
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
info - Low level messages
trace - Function call trace
fail - Report test failures
warning - Warnings
error - Report errors
debug - Debug output
message - Normal messages
fatal - Report only fatal errors
--copyright
print copyright information
-h --help
print this help
-? --usage
print a short help
--version
print the version number and exit

Processing

--threads=-1
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

PLUGINS: 3dlandmarklist/io

datapool
Virtual IO to and from the internal data pool

Recognized file extensions: [email protected]

 
lmx
IO plugin to load and store 3D landmark lists

Recognized file extensions: .lmx

 

PLUGINS: 3dtransform/io

bbs
Binary (non-portable) serialized IO of 3D transformations

Recognized file extensions: .bbs

 
datapool
Virtual IO to and from the internal data pool

Recognized file extensions: [email protected]

 
vista
Vista storage of 3D transformations

Recognized file extensions: .v, .v3dt

 
xml
XML serialized IO of 3D transformations

Recognized file extensions: .x3dt

 

EXAMPLE

Transform the landmarks given in input.lmx by applyning the transfromation stored in trans.v and store the result in output.lmx
mia-3dlandmarks-transform -i input.lmx -t trans.v -o output.lmx

AUTHOR(s)

Gert Wollny

COPYRIGHT

This software is Copyright (c) 1999-2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.