Usage: oligo_count [-h/--help] [-l/--length OLIGOLENGTH]
[-f/--format SEQFORMAT] [-i/--in/-s/--sequence SEQFILE]
DESCRIPTIONThis scripts counts occurrence and frequency for all oligonucleotides of given length.
It can be used to determine what primers are useful for frequent priming of nucleic acid for random labeling.
Note that this script could be run by utilizing the compseq program which is part of EMBOSS.
OPTIONSThe default sequence format is fasta. If no outfile is given, the results will be printed to standard out. All other options can entered interactively.
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AUTHOR - Charles C. KimEmail [email protected]
HISTORYWritten July 2, 2001
Submitted to bioperl scripts project 2001/08/06
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