parseval(1) comparative analysis of two alternative sources of annotation

SYNOPSIS

parseval [,options/] ,reference.gff3 prediction.gff3/

DESCRIPTION

Basic options:
-d|--debug:
Print debugging messages
-h|--help:
Print help message and exit
-l|--delta: INT
Extend gene loci by this many nucleotides; default is 0
-V|--verbose:
Print verbose warning messages
-v|--version:
Print version number and exit
Output options:
-a|--datashare: STRING
Location from which to copy shared data for HTML output (if `make install' has not yet been run)
-f|--outformat: STRING
Indicate desired output format; possible options: 'csv', 'text', or 'html' (default='text'); in 'text' or 'csv' mode, will create a single file; in 'html' mode, will create a directory
-g|--nogff3:
Do no print GFF3 output corresponding to each comparison
-o|--outfile: FILENAME
File/directory to which output will be written; default is the terminal (STDOUT)
-p|--nopng:
In HTML output mode, skip generation of PNG graphics for each gene locus
-s|--summary:
Only print summary statistics, do not print individual comparisons
-w|--overwrite:
Force overwrite of any existing output files
-x|--refrlabel: STRING
Optional label for reference annotations
-y|--predlabel: STRING
Optional label for prediction annotations
Filtering options:
-k|--makefilter
Create a default configuration file for filtering reported results and quit, performing no comparisons
-r|--filterfile: STRING
Use the indicated configuration file to filter reported results;
-t|--maxtrans: INT
Maximum transcripts allowed per locus; use 0 to disable limit; default is 32