SYNOPSIS
- scftool <toolname> <tool parameters>
OPTIONS
Available tools:- convert
- Cuts the given range out of an SCF file and makes a new SCF out of it.
- To get help more specific help please type scftool convert
- cut
- Cuts a given range of a SCF file into a new SCF file.
- remix
- Combines trace information of a SCF file with new bases, qualities and peak values (either in FASTA or PHD format) into a new SCF file.
EXAMPLES
Example for cut:- scftool cut infile lower_base_bound upper_base_bound outfile
Usage of remix (when using PHD files as input for bases, quals and peaks):
- scftool remix scf_infile phd_infile scf_outfile
Usage of remix (when using FASTA files as input for bases, quals and peaks):
- scftool remix scf_infile bases_infile quals_infile peaks_infile scf_outfile
BUGS
To report bugs or ask for features, please use the new ticketing system at:AUTHOR
The author of the mira code is Bastien Chevreux <[email protected]>This manual page was written by Andreas Tille <[email protected]> but can be freely used for any other distribution.