subread-fullscan(1) scans the entire genome and reports all matches of a specified sequence

USAGE

subread-fullscan [options] -i <index_name> <read_string>

Required arguments:

-i <string>
Base name of the index.
read_string
The read bases.

Optional arguments:

-m <float>
The minimum fraction of matched bases in the read, 0.8 by default