VERSIONThis documentation refers to TM-score version released on 2011/01/30
SYNOPSIS1. Run TM-score to compare 'model' and 'native':
TMscore model native
2. Run TM-score with an assigned d0, e.g. 5 Angstroms:
TMscore model native -d 5
3. Run TM-score with superposition output, e.g. 'TM.sup', and view in Rasmol:
TMscore model native -o TM.sup rasmol -script TM.sup
DESCRIPTIONThis program is to compare two protein structures and identify the best superposition that has the highest TM-score. Input structures must be in the PDB format. By default, TM-score is normalized by the second protein. Users can obtain a brief instruction by simply running the program without arguments.
-o filename.sup Outputs the superposition to the specified file,
suitable for use in rasmol.
-d value Sets d0 to the specified number of angstroms.