truspades(1) truSPAdes genome assembler


truspades [options] -o <output_dir>


truspades is the main executable for the truSPAdes software. It assembles genomic reads given to it and places the resulting assembly in <output_dir>.


Basic options

-o <output_dir>

directory to store all the resulting files (required)


runs truSPAdes on toy dataset


prints this usage message

-t/--threads <int>

number of threads


continue interrupted launch


parse dataset from input folder

Input options

--input-dir <directory>

directory with input data. Note that the directory should contain only files with reads. This option can be used several times to provide several input directories.

--dataset <file>:w:
    file with dataset description