ali2gff(1) Module to translate a MUMmer output files into gff formatted output.


ali2gff [-r] [-t <.|0|1|2>] [-x <name>] [-y <name>] [-H] [-f] [-h] <MUMmer_output_file>


-h, --help
Show summary of options.
Interchange the order of sequences (sequence 1 on y-axis, sequence 2 on x-axis).
-t <.|0|1|2>
Put label 'frame' in gff output.
-x <name>
Specify the species name for species1 (default: "Seq1").
-y <name>
Specify the species name for species2 (default: "Seq2").
Ignore full sequence identities.
Write output to file.


ali2gff was written by Steffi Gebauer-Jung.

This manual page was written by Nelson A. de Oliveira <[email protected]>, for the Debian project (but may be used by others).