antsAlignOrigin(1) part of ANTS registration suite



antsAlignOrigin, applied to an input image, transforms it according to a reference image and a transform (or a set of transforms).


-d, --dimensionality 2/3
This option forces the image to be treated as a specified-dimensional image. If not specified, antsWarp tries to infer the dimensionality from the input image.
-i, --input inputFileName
Currently, the only input objects supported are image objects. However, the current framework allows for warping of other objects such as meshes and point sets.
-r, --reference-image imageFileName
For warping input images, the reference image defines the spacing, origin, size, and direction of the output warped image.
-o, --output warpedOutputFileName
One can either output the warped image or, if the boolean is set, one can print out the displacement field based on thecomposite transform and the reference image.
Print the help menu (short version). <VALUES>: 0
Print the help menu. <VALUES>: 1, 0