DESCRIPTION

COMMAND:

antsAlignOrigin

antsAlignOrigin, applied to an input image, transforms it according to a reference image and a transform (or a set of transforms).

OPTIONS:

-d, --dimensionality 2/3

This option forces the image to be treated as a specified-dimensional image. If not specified, antsWarp tries to infer the dimensionality from the input image.

-i, --input inputFileName

Currently, the only input objects supported are image objects. However, the current framework allows for warping of other objects such as meshes and point sets.

-r, --reference-image imageFileName

For warping input images, the reference image defines the spacing, origin, size, and direction of the output warped image.

-o, --output warpedOutputFileName

[transform,alignedImage]

One can either output the warped image or, if the boolean is set, one can print out the displacement field based on thecomposite transform and the reference image.

-h

Print the help menu (short version). <VALUES>: 0

--help

Print the help menu. <VALUES>: 1, 0