asn2ff(1)
convert ASN.1 biological data to a flat format (old version)
SYNOPSIS
asn2ff
[-]
[-A X]
[-B X]
[-C]
[-G]
[-L F]
[-M]
[-R]
[-V F]
[-a filename]
[-b]
[-d]
[-e]
[-f b/p/e/s/x/z]
[-g]
[-h F]
[-k F]
[-l filename]
[-m r/d/s/c/k/l/e/p]
[-n F]
[-o filename]
[-p F]
[-q]
[-r filename]
[-s]
[-t]
[-v F]
[-w]
[-y]
[-z]
DESCRIPTION
asn2ff converts descriptions of biological sequences from NCBI's
ASN.1 format to one of several flat-file formats. This program is
built around a deprecated interface; please use
asn2gbFP(1) instead.
OPTIONS
A summary of options is included below.
- -
-
Print usage message
- -A X
-
Show region starting at X (default is 0)
- -B X
-
Show region ending at X (default is last position)
- -C
-
Show Bankit comments
- -G
-
Output is one top bioseq only in genome view
- -L F
-
Use old (pre-Genbank 127.0) LOCUS line format
- -M
-
Output is map bioseqs only
- -R
-
For GenBank Release
- -V F
-
Don't use VERSION
- -a filename
-
Filename for ASN.1 input (default is stdin)
- -b
-
Input asnfile in binary mode
- -d
-
Use SeqMgr indexing
- -e
-
Input is a Seq-entry
- -f b/p/e/s/x/z
-
Output Format:
-
- b
-
GenBank (default)
- p
-
GenPept
- e
-
EMBL
- s
-
PseudoEMBL
- x
-
GenBankSelect
- z
-
EMBLPEPT
- -g
-
Show gi numbers
- -h F
-
Hide sequence
- -k F
-
Don't use complex sets (phy-set,mut-set, pop-set)
- -l filename
-
Log errors to filename
- -m r/d/s/c/k/l/e/p
-
Output mode:
-
- r
-
release (default)
- d
-
dump
- s
-
Sequin
- c
-
Chromoscope
- k
-
dir-sub-debug
- l
-
dir-sub
- e
-
revise
- p
-
partial report
- -n F
-
Strict gene_binding
- -o filename
-
Output Filename (default is stdout)
- -p F
-
Omit new gene features
- -q
-
Output is one top bioseq only
- -r filename
-
Output error logfile (default is stderr)
- -s
-
Input is a Seq-submit
- -t
-
Show verbose message text
- -v F
-
Suppress error messages
- -w
-
Use HTML output format
- -y
-
Print help format only
- -z
-
New algorithm for orgnames
AUTHOR
The National Center for Biotechnology Information.