asn2xml(1)
translate biological data from ASN.1 to XML
SYNOPSIS
asn2xml
[-]
[-b F]
[-e]
[-i filename]
[-l filename]
[-o filename]
[-s]
DESCRIPTION
asn2xml converts an NCBI Seq-entry or Bioseq-set from ASN.1
format to an isomorphic XML representation. It differs from
asn2asn -x in that it converts packed sequence data back into
human-readable ASCII text.
OPTIONS
A summary of options is included below.
- -
-
Print usage message
- -b F
-
Input asnfile in text mode
- -e
-
Input is a Seq-entry
- -i filename
-
Read ASN.1 from filename (default is stdin)
- -l filename
-
Log errors to filename (default is stderr)
- -o filename
-
Write XML to filename (default is stdout)
- -s
-
Input is a Seq-submit
AUTHOR
The National Center for Biotechnology Information.