barrnap(1) rapid ribosomal RNA prediction


barrnap [options] <chromosomes.fasta>


Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).


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--kingdom [X]
Kingdom: mito bac arc euk (default 'bac')
No screen output (default OFF)
--threads [N]
Number of threads/cores/CPUs to use (default '8')
--lencutoff [n.n] Proportional length threshold to label as partial (default '0.8')
--reject [n.n]
Proportional length threshold to reject prediction (default '0.5')
--evalue [n.n]
Similarity e-value cut-off (default '1e-09')
Include FASTA input sequences in GFF3 output (default OFF)