Bio::DB::SeqFeature::Store::berkeleydb3(3) Storage and retrieval of sequence

SYNOPSIS


# Create a feature database from scratch
$db = Bio::DB::SeqFeature::Store->new( -adaptor => 'berkeleydb',
-dsn => '/var/databases/fly4.3',
-create => 1);
# get a feature from somewhere
my $feature = Bio::SeqFeature::Generic->new(...);
# store it
$db->store($feature) or die "Couldn't store!";

DESCRIPTION

This is a faster version of the berkeleydb storage adaptor for Bio::DB::SeqFeature::Store. It is used automatically when you create a new database with the original berkeleydb adaptor. When opening a database created under the original adaptor, the old code is used for backward compatibility.

Please see Bio::DB::SeqFeature::Store::berkeleydb for full usage instructions.

BUGS

This is an early version, so there are certainly some bugs. Please use the BioPerl bug tracking system to report bugs.

AUTHOR

Lincoln Stein <[email protected]>.

Copyright (c) 2009 Ontario Institute for Cancer Research

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.