SYNOPSIS

# get a Map Factory somehow likely from Bio::MapIO system
while( my $map = $mapin->next_map ) {
print "map name is ", $map->name, " length is ",
$map->length, " ", $map->units, "\n";
$mapout->write_map($map);
}

DESCRIPTION

This interface describes the necessary minimum methods for getting Maps from a data stream. It also supports writing Map data back to a stream.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  [email protected]                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

[email protected]

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://github.com/bioperl/bioperl-live/issues

AUTHOR - Jason Stajich

Email [email protected]

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

next_map

 Title   : next_map
 Usage   : my $map = $factory->next_map;
 Function: Get a map from the factory
 Returns : L<Bio::Map::MapI>
 Args    : none

write_map

 Title   : write_map
 Usage   : $factory->write_map($map);
 Function: Write a map out through the factory
 Returns : none
 Args    : L<Bio::Map::MapI>