Bio::Graphics::Glyph::transcript2(3) The transcript2 glyph

SYNOPSIS


See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.

DESCRIPTION

This glyph is used for drawing transcripts. It is like ``transcript'' except that if there is sufficient room the terminal exon is shaped like an arrow in order to indicate the direction of transcription. If there isn't enough room, a small arrow is drawn.

OPTIONS

The following options are standard among all Glyphs. See Bio::Graphics::Glyph for a full explanation. 

  Option      Description                      Default
  ------      -----------                      -------
  -fgcolor      Foreground color               black
  -outlinecolor Synonym for -fgcolor
  -bgcolor      Background color               turquoise
  -fillcolor    Synonym for -bgcolor
  -linewidth    Line width                     1
  -height       Height of glyph                10
  -font         Glyph font                     gdSmallFont
  -connector    Connector type                 0 (false)
  -connector_color
                Connector color                black
  -label        Whether to draw a label        0 (false)
  -description  Whether to draw a description  0 (false)
  -strand_arrow Whether to indicate            0 (false)
                 strandedness
  -hilite       Highlight color                undef (no color)

In addition, the alignment glyph recognizes the following glyph-specific options: 

  Option         Description                  Default
  ------         -----------                  -------
  -arrow_length  Length of the directional   8
                 arrow.

BUGS

Please report them.

AUTHOR

Lincoln Stein <[email protected]>

Copyright (c) 2001 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.

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