SYNOPSIS
use Bio::Phenotype::Measure;
my $measure = Bio::Phenotype::Measure->new( -context => "length",
-description => "reduced length in 4(Tas1r3)",
-start => 0,
-end => 15,
-unit => "mm",
-comment => "see also Miller et al" );
print $measure->context();
print $measure->description();
print $measure->start();
print $measure->end();
print $measure->unit();
print $measure->comment();
print $measure->to_string();
DESCRIPTION
Measure is for biochemically defined phenotypes or any other types of measures.FEEDBACK
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Support
Please direct usage questions or support issues to the mailing list:rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
AUTHOR
Christian M. ZmasekEmail: czmasek-at-burnham.org or [email protected]
WWW: http://monochrome-effect.net/
Address:
Genomics Institute of the Novartis Research Foundation 10675 John Jay Hopkins Drive San Diego, CA 92121
APPENDIX
The rest of the documentation details each of the object methods.new
Title : new Usage : my $me = Bio::Phenotype::Measure->new( -context => "length", -description => "reduced length in 4(Tas1r3)", -start => 0, -end => 15, -unit => "mm", -comment => "see Miller also et al" ); Function: Creates a new Measure object. Returns : A new Measure object. Args : -context => the context -description => a description -start => the start value -end => the end value -unit => the unit -comment => a comment
init
Title : init() Usage : $measure->init(); Function: Initializes this Measure to all "". Returns : Args :
context
Title : context Usage : $measure->context( "Ca-conc" ); or print $measure->context(); Function: Set/get for the context of this Measure. Returns : The context. Args : The context (optional).
description
Title : description Usage : $measure->description( "reduced in 4(Tas1r3)" ); or print $measure->description(); Function: Set/get for the description of this Measure. Returns : A description. Args : A description (optional).
start
Title : start Usage : $measure->start( 330 ); or print $measure->start(); Function: Set/get for the start value of this Measure. Returns : The start value. Args : The start value (optional).
end
Title : end Usage : $measure->end( 459 ); or print $measure->end(); Function: Set/get for the end value of this Measure. Returns : The end value. Args : The end value (optional).
unit
Title : unit Usage : $measure->unit( "mM" ); or print $measure->unit(); Function: Set/get for the unit of this Measure. Returns : The unit. Args : The unit (optional).
comment
Title : comment Usage : $measure->comment( "see also Miller et al" ); or print $measure->comment(); Function: Set/get for an arbitrary comment about this Measure. Returns : A comment. Args : A comment (optional).
to_string
Title : to_string() Usage : print $measure->to_string(); Function: To string method for Measure objects. Returns : A string representations of this Measure. Args :