VERSION

version 3.6.3

SYNOPSIS

Wrapper to run mafft
   use Bio::Roary::External::Mafft;

my $mafft_obj = Bio::Roary::External::Mafft->new(
input_filename => $fasta_file,
output_filename => $fasta_file.'.aln',
job_runner => 'Local'
);
$mafft_obj->run();

AUTHOR

Andrew J. Page <[email protected]>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007