Bio::SearchIO::Writer::BSMLResultWriter(3) BSML output writer


use Bio::SearchIO;
my $in = Bio::SearchIO->new(-file => 'result.blast',
-format => 'blast');
my $out = Bio::SearchIO->new(-output_format => 'BSMLResultWriter',
-file => ">result.bsml");
while( my $r = $in->next_result ) {


This is a writer to produce BSML for a search result.


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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _


 Title   : new
 Usage   : my $obj = Bio::SearchIO::Writer::BSMLResultWriter->new();
 Function: Builds a new Bio::SearchIO::Writer::BSMLResultWriter object 
 Returns : an instance of Bio::SearchIO::Writer::BSMLResultWriter
 Args    :


 Purpose   : Produces data for each Search::Result::ResultI in a string.
           : This is an abstract method. For some useful implementations,
           : see,, 
           : and
 Usage     : print $writer->to_string( $result_obj, @args );
 Argument  : $result_obj = A Bio::Search::Result::ResultI object
           : @args = any additional arguments used by your implementation.
 Returns   : String containing data for each search Result or any of its
           : sub-objects (Hits and HSPs).
 Throws    : n/a