Bio::Search::Result::WABAResult(3) Result object for WABA alignment output


# use this object exactly as you would a GenericResult # the only extra method is query_database which is the # name of the file where the query sequence came from


This object is for WABA result output, there is little difference between this object and a GenericResult save the addition of one method query_database. Expect many of the fields for GenericResult to be empty however as WABA was not intended to provide a lot of extra information other than the alignment.


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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _


 Title   : new
 Usage   : my $obj = Bio::Search::Result::WABAResult->new();
 Function: Builds a new Bio::Search::Result::WABAResult object 
 Returns : Bio::Search::Result::WABAResult
 Args    : -query_database => "name of the database where the query came from"


 Title   : query_database
 Usage   : $obj->query_database($newval)
 Function: Data field for the database filename where the 
           query sequence came from
 Returns : value of query_database
 Args    : newvalue (optional)

All other methods are inherited from Bio::Search::Result::GenericResult

See the Bio::Search::Result::GenericResult for complete documentation of the rest of the methods that are available for this module.