SYNOPSIS
use Bio::Tools::PrositeScan;
my $factory = Bio::Tools::PrositeScan->new(
-file => 'out.PrositeScan'
);
while(my $match = $factory->next_prediction){
# $match is of Bio::SeqFeature::FeaturePair
my $q_id = $fatch->feature1->seq_id;
my $h_id = $fatch->feature2->seq_id;
}
DESCRIPTION
This is the parser of the output of ps_scan program. It takes either a file handler or a file name, and returns a Bio::SeqFeature::FeaturePair object.AUTHOR
Juguang Xiao, [email protected]new
Title : new Usage : Bio::Tools::PrositeScan->new(-file => 'out.PrositeScan'); Bio::Tools::PrositeScan->new(-fh => \*FH); Returns : L<Bio::Tools::PrositeScan>
next_prediction
Title : new Usage : while($result = $factory->next_prediction){ ; } Returns : a Bio::SeqFeature::FeaturePair object