Bio::Tools::RepeatMasker(3) a parser for RepeatMasker output


use Bio::Tools::RepeatMasker;
my $parser = Bio::Tools::RepeatMasker->new(-file => 'seq.fa.out');
while( my $result = $parser->next_result ) {
# get some value


A parser for RepeatMasker output


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AUTHOR - Shawn Hoon

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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _


 Title   : new
 Usage   : my $obj = Bio::Tools::RepeatMasker->new();
 Function: Builds a new Bio::Tools::RepeatMasker object
 Returns : Bio::Tools::RepeatMasker
 Args    : -fh/-file => $val, for initing input, see Bio::Root::IO


 Title   : next_result
 Usage   : my $r = $rpt_masker->next_result
 Function: Get the next result set from parser data
 Returns : Bio::SeqFeature::FeaturePair
           Feature1 is the Query coordinates and Feature2 is the Hit
 Args    : none