SYNOPSIS
bowtie-inspect [,options/],* <ebwt_base>/DESCRIPTION
- <ebwt_base>
- ebwt filename minus trailing .1.ebwt/.2.ebwt
- By default, prints FASTA records of the indexed nucleotide sequences to standard out. With -n, just prints names. With -s, just prints a summary of the index parameters and sequences. With -e, preserves colors if applicable.
OPTIONS
- --large-index
- force inspection of the 'large' index, even if a 'small' one is present.
- -a/--across <int>
- Number of characters across in FASTA output (default: 60)
- -n/--names
- Print reference sequence names only
- -s/--summary
- Print summary incl. ref names, lengths, index properties
- -e/--ebwt-ref
- Reconstruct reference from ebwt (slow, preserves colors)
- -v/--verbose
- Verbose output (for debugging)
- -h/--help
- print detailed description of tool and its options
- --help
- print this usage message
64-bit Built on Debian-reproducible Wed, 25 May 2016 22:25:27 +0000 Compiler: gcc version 5.3.1 20160519 Options: -O3 -Wl,--hash-style=both -Wdate-time -D_FORTIFY_SOURCE=,2/ -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=,format-security/ -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=,format-security/ -fPIE -pie -Wl,-z,relro -Wl,-z,now Sizeof {int, long, long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}