bp_extract_feature_seq(1) extract the corresponding sequence for a specified feature type


bp_extract_feature_seq [--format FORMAT] [--feature CDS] [--output FILE] [--input] FILE


This script will extract the sequence for all the features you specify.


-i, --input
Specifies the sequence file to be read.
Format of the file specifed by --input. If not given, it will try to guess the correct format from the file extension.
Feature to be extracted. By default, it extracts the CDS feature.
-o, --output
File where the extracted features will be saved. If not specified, STDOUT is used.


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 Jason Stajich <jason-at-bioperl-dot-org>