bp_generate_histogram.pl(1) Generate a histogram of Bio::DB::GFF features

SYNOPSIS


bp_generate_histogram.pl -d gadfly variation gene:curated

DESCRIPTION

Use this utility to generate feature density histograms from Bio::DB::GFF databases. The result is a GFF data file that is suitable for loading with load_gff.pl.

OPTIONS

The following options are recognized: 

  Option        Description
  ------        -----------
   --dsn        <dsn>       Data source (default dbi:mysql:test)
   --adaptor    <adaptor>   Schema adaptor (default dbi::mysqlopt)
   --user       <user>      Username for mysql authentication
   --pass       <password>  Password for mysql authentication
   --aggregator <list>      Comma-separated list of aggregators

BUGS

Please report them.

AUTHOR

Lincoln Stein <[email protected]>

Copyright (c) 2001 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.

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