CADD(1) A computer aided drug design using Vision


runCADD [options] [filenames]


This manual page is an almost literal translation of the output provided by runCADD -h command.


A summary of options is included below. For a complete description, refer to the tutorials and documentation that is available online.

Files <filenames> ending in "" will be laoded as networks in vision. Other files will be executed as Python scripts in which "ed" refers to the VisualProgrammingEnvironment instance.

-h, --help
Show summary of options.
-e, --runAndExit
run the networks and exit
-p, --ipython
create an ipython shell instead of a python shell
-r, --run
run the networks on the command line
-s, --noSplash
doesn't show the CADD splash screen (works only if registered)
-t, --NoTerminal
vision provides its own shell (under menu 'Edit') instead of the terminal
--resourceFolder foldername
stores resource file under .name (defaults to .mgltools)

port values can be passed on the command line (but not to macros): nodeName:portName:value


runCADD was written by researchers of the Molecular Graphics Lab at the Scripps Institute <[email protected]>.

This manual page was written by Thorsten Alteholz <[email protected]>, for the Debian project (but may be used by others).