SYNOPSIS
chainsaw [OPTIONS] reconciled-gene-tree species-tree
DESCRIPTION
reconciled-gene-tree is the filename of the file containing trees in PRIME format. Notice that the node id is optional and if left out all species nodeswill be used recursively.
species-tree is the species tree
OPTIONS
- --help
- Display help (this text).
- -V, --version
- Print version and exit
- -g, --guest-tree-format primeOrHybrid|inputxml
- The input format. Default is primeOrHybrid
- -h, --host-tree-format primeOrHybrid|inputxml
- The input format of the host tree. Default is primeOrHybrid
- -x, --node-name=STRING
- A named species node to cut at
- -i, --node-id=INT
-
The numerical id of a species node to cut at
EXIT STATUS
- 0
- Successful program execution.
- 1
-
Some error occurred
URL
- The prime-phylo home page: http://prime.sbc.su.se
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