SYNOPSIS
chaos_plot.pl -i/--input=INPUTFILE -f/--format=SEQFORMAT
-o/--output=OUTPUTFILE -g/--graphics=GRAPHIC FORMAT
-w/--width=WIGHT -h/--height=HEIGHT
DESCRIPTION
This scripts generates image files using GD image library to visualize nucleotide sequences using chaos plot.OPTIONS
Valid graphics formats are currently gd, gd2, png, wbmp, jpeg and gif.The default size of the image file is 600x400.
The sequence input can be provided using any of the three methods:
- unnamed argument
-
chaos_plot filename
- named argument
-
chaos_plot -i filename
- standard input
-
chaos_plot < filename
FEEDBACK
Mailing Lists
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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
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AUTHOR - Jason Stajich
Email [email protected]HISTORY
This code is based on EMBOSS C code for chaos.c by Ian Longden. Included are documentation from EMBOSS code:Chaos produces a chaos plot. The original application is part of the ACEDB genome database package, written by ** Richard Durbin (MRC LMB, UK) [email protected], and Jean Thierry-Mieg (CRBM du CNRS, France) [email protected]