SYNOPSIS

chromostitch.pl [options] <stitch file> <chromosome1 chromosome2 ... >

Options:

--sort sorts everything

--output=<file> altnerate way of specifying an output file

PARAMETERS

stitch file output file (overwrites)

chromosome1 chromosome2 ... List of chromosome input files

B---output=<file> Alternate way of specifying an output file

B---sort Always sort EVERYTHING. (Allows for nicely sorted lists from sloppy input of filenames from like multiple directories of *.gbk or something)

DESCRIPTION

Makes stitch files for feeding to geneparse.pl to allow feeding of multiple chromosomes to programs like murasaki