consensusFinder input_fasta_file [options]
- pattern length
- p-value for finding the significant strings
- delta to find the relevant strings
- starting position
- ending position
- no. of mismatches to consider while finding neighbours
- string to consider for analysis
- specify the number of consensus patterns to store
- print the histogram
AUGUSTUS was written by M. Stanke, O. Keller, S. König, L. Gerischer and L. Romoth.
An exhaustive documentation can be found in the file /usr/share/augustus/README.TXT.