man cpgreport (1): Identify and report CpG-rich regions in nucleotide sequence(s)

SYNOPSIS

cpgreport -sequence seqall -score integer -outfile outfile -outfeat featout
cpgreport -help

DESCRIPTION

cpgreport

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Nucleic:CpG Islands" command group(s).

OPTIONS

Input section

-sequence seqall

Required section

-score integer

: This sets the score for each CG sequence found. A value of 17 is more sensitive, but 28 has also been used with some success. Default value: 17

Output section

-outfile outfile

-outfeat featout

: File for output features

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

AUTHOR

Debian Med Packaging Team <[email protected]>

: Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.