Create a SAM header with PacBio sequencing chemistry information


usage: [-h] [--debug] --bas_files BAS_FILES
input_alignment_file output_header_file

createChemistryHeader creates a SAM header that contains the chemistry information used by Quiver.

positional arguments:

A SAM or BAM file produced by BLASR.
Name of the SAM or BAM header file that will be created with chemistry information loaded.

optional arguments:

-h, --help
show this help message and exit
Output detailed log information. (default: False)
--bas_files BAS_FILES [BAS_FILES ...]
The bas or bax files containing the reads that were aligned in the input_alignment_file. Also can be a fofn of bas or bax files. (default: None)