SYNOPSIS

csg_gmxtopol [OPTION] [OPTIONPARAMETERS]

DESCRIPTION

Create skeleton for gromacs topology based on atomistic topology and a mapping file. File still needs to be modified by the user.

Please visit the program site at __http://www.votca.org__.

OPTIONS

Allowed options:

-h [ --help ]

display this help and exit

-v [ --verbose ]

be loud and noisy

--top arg

atomistic topology file

--out arg

output topology (will create .top and in future also .itp)

Mapping options:

--cg arg

coarse graining mapping and bond definitions (xml-file)

--map-ignore arg

list of molecules to ignore separated by ;

--no-map

disable mapping and act on original trajectory

AUTHORS

Written and maintained by the VOTCA Development Team <[email protected]>

This Manual Page was converted from t2t format to the this format by txt2tags (http://txt2tags.org) ! The t2t file was extracted from 'csg_gmxtopol --help' by help2t2t (version 1.3 )

COPYRIGHT

Copyright 2009-2011 The VOTCA Development Team (http://www.votca.org)

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

    http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.