man dbifasta (1): Index a fasta file database

SYNOPSIS

dbifasta -dbname string -idformat list -directory directory -filenames string -release string -date string -fields list -exclude string -maxindex integer -sortoptions string -systemsort boolean -cleanup boolean -outfile outfile -indexoutdir outdir
dbifasta -help

DESCRIPTION

dbifasta

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Utils:Database indexing" command group(s).

OPTIONS

Input section

-dbname string

-idformat list

: Default value: idacc

-directory directory

: Default value: .

-filenames string

: Default value: *.dat

Required section

-release string

: Default value: 0.0

-date string

: Default value: 00/00/00

Advanced section

-fields list

: Default value: acc

-exclude string

-maxindex integer

-sortoptions string

: Sort options, typically '-T .' to use current directory for work files and '-k 1,1' to force GNU sort to use the first field Default value: -T . -k 1,1

-systemsort boolean

: Default value: Y

-cleanup boolean

: Default value: Y

Output section

-outfile outfile

-indexoutdir outdir

: Default value: .

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

AUTHOR

Debian Med Packaging Team <[email protected]>

: Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.