DESCRIPTION

usage: fastaq_caf_to_fastq [options] <infile> <outfile>

Converts CAF file to FASTQ format

positional arguments:

infile

Name of input CAF file.

outfile

Name of output FASTQ file

optional arguments:

-h, --help

show this help message and exit

-c, --clip

Use clipping info to clip reads, if present in the input CAF file (as lines of the form "Clipping QUAL start end"). Default is to not clip

-l INT, --min_length INT

Minimum length of sequence to output [1]