DESCRIPTION

usage: fastaq_enumerate_names [options] <infile> <outfile>

Renames sequences in a file, calling them 1,2,3... etc

positional arguments:

infile

Name of fasta/q file to be read

outfile

Name of output fasta/q file

optional arguments:

-h, --help

show this help message and exit

--start_index START_INDEX

Starting number [1]

--rename_file RENAME_FILE

If used, will write a file of old name to new name

--keep_suffix

Use this to keep a ,/1/ or ,/2/ suffix at the end of each name

--suffix SUFFIX

Add the given string to the end of every name