fastq_quality_filter(1) Filters sequences based on quality


usage: fastq_quality_filter [-h] [-v] [-q N] [-p N] [-z] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.14 by A. Gordon ([email protected])
= This helpful help screen.
[-q N]
= Minimum quality score to keep.
[-p N]
= Minimum percent of bases that must have [-q] quality.
= Compress output with GZIP.
= FASTA/Q input file. default is STDIN.
[-o OUTFILE] = FASTA/Q output file. default is STDOUT. [-v] = Verbose - report number of sequences.
If [-o] is specified,
report will be printed to STDOUT.
If [-o] is not specified (and output goes to STDOUT), report will be printed to STDERR.