usage: fastx_trimmer [-h] [-f N] [-l N] [-t N] [-m MINLEN] [-z] [-v] [-i INFILE] [-o OUTFILE]
Part of FASTX Toolkit 0.0.14 by A. Gordon ([email protected]
= This helpful help screen.
- [-f N]
= First base to keep. Default is 1 (=first base).
- [-l N]
= Last base to keep. Default is entire read.
- [-t N]
= Trim N nucleotides from the end of the read.
can not be used with '-l' and '-f'.
- [-m MINLEN]
= With [-t], discard reads shorter than MINLEN.
= Compress output with GZIP.
- [-i INFILE]
= FASTA/Q input file. default is STDIN.
[-o OUTFILE] = FASTA/Q output file. default is STDOUT.